Supplementary material – interactive report

This website hosts the supplementary materials for the thesis in a format that can be explored in a web browser. Use the navigation links at the top to open the main sections:

• UMAP – interactive maps of cell populations and small RNA activity (72 hpa only).
  • Population UMAPs: show the overall single-cell atlas in two views (general and detailed), displayed side-by-side.
  • Small RNA activity (72 hpa): use the searchable selector to choose one small RNA (sRNA) and load its activity map.
  • If a plot does not load, refresh the page once.
• Figures – PDF figures that can be opened in the browser or downloaded.
• Tables – supplementary tables provided as Excel files (.xlsx) plus interactive previews.
  • The preview is meant for quick browsing, sorting, and searching within a sheet.
  • The download link provides the original .xlsx file for full inspection, filtering, or reuse in Excel/R/Python.
  • The “Mention in thesis” field indicates where each table is referenced in the main text.
• Scripts – analysis scripts and helper code.
  • .R and .sh files can be previewed directly in the browser and also downloaded.
  • .py and .ipynb files are provided for download and local execution.